Welcome to Oxford SP3’s documentation!¶
SP3 stands for Scalable Pathogen Pipeline Platform
Scalable: SP3 uses elastic cloud computing to scale the compute nodes based on demands.
Pathogen: SP3 provides an efficient and unified process of collecting, analysing and comparing pathogen genomic data analysis.
Pipeline: SP3 supports bioinformatic pipelines that developed using Nextflow and containers.
Platform: SP3 has been deployed and tested on Google Cloud Platform (GCP), Microsoft Azure Cloud, Amazon Elastic Compute Cloud (Amazon EC2) and OpenStack Platforms.
- Data Types
- Data storage
- User Guide
- SP3 Features
- Pipeline Developer Guide