Welcome to Oxford SP3’s documentation!

SP3 stands for Scalable Pathogen Pipeline Platform

  • Scalable: SP3 uses elastic cloud computing to scale the compute nodes based on demands.

  • Pathogen: SP3 provides an efficient and unified process of collecting, analysing and comparing pathogen genomic data analysis.

  • Pipeline: SP3 supports bioinformatic pipelines that developed using Nextflow and containers.

  • Platform: SP3 has been deployed and tested on Google Cloud Platform (GCP), Microsoft Azure Cloud, Amazon Elastic Compute Cloud (Amazon EC2) and OpenStack Platforms.